PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00221
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 380aa    MW: 40342.8 Da    PI: 8.1105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00221genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-0988111125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 +kt+lC+ f++ GtC+y  +C+FaH
  AA53G00221  88 FKTKLCCKFRA-GTCPYVTNCNFAH 111
                 69*********.************* PP

2zf-CCCH17.76.3e-06166189326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + C+ f+    C+yG++C+F+H+
  AA53G00221 166 GRHCKKFYTEEGCPYGESCTFMHD 189
                 5669*****9*************7 PP

3zf-CCCH42.61e-13256281126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  AA53G00221 256 WKTRICNKWEITGYCPFGAKCHFAHG 281
                 8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.33E-785118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-1385120IPR000571Zinc finger, CCCH-type
SMARTSM003560.003987113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67187114IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-788111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7162190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112163191IPR000571Zinc finger, CCCH-type
SMARTSM003560.55163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-8163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-17249285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-10251286IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178255283IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11256281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSNHRRDSGG DVVHVIPTNN PPPEIWFPNL SDSSVWATED DYNRVWAVNP DMFSDTAGPP  60
NKKTRGSPSS SSSASASNRT KAIGKMFFKT KLCCKFRAGT CPYVTNCNFA HTVEELRRPP  120
PNWQEIVQAH EEERSATGAP IVEPREEFQI PSLVSSSAEN ARSFKGRHCK KFYTEEGCPY  180
GESCTFMHDE ASRNRESVAI SLGPGGYGGG GGGGGSSSVV GGGSSGGAGS NIVVLGGGNG  240
GGGSGNGAQI VKPSNWKTRI CNKWEITGYC PFGAKCHFAH GAAELHRFGG GLVEGEGKEG  300
VLTSPEPKQT GLNLKGQAET MTVLSPGVSH TDQASGYLPG VVPQRVSTGV TQKPGIRTHQ  360
KWKGPAKISR IYGDWIDDNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478659.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D3CDQ10.0A0A0D3CDQ1_BRAOL; Uncharacterized protein
STRINGAT1G32360.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-179C3H family protein